Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4M1W Chain:C ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAGQ-EYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106710 for 1291 contacts (-82.7/contact) +
2D Compatibility (PS) -17493 + (NN) -7353 + (LL) 2164
1D Compatibility (HY) -20400 + (ID) 7400
Total energy: -157192.0 ( -121.76 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4M1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1W-query.scw
PDB file :
Tito_Scwrl_4M1W.pdb
: