Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWK-LKKEISYFKRVTSFVPTFDSFES-MNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIH-SAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
3GHV Chain:A ((3-185))
-----SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMT----TTSSVEGKQNLVIMGKKTWFSIPEKFRPLKGRINLVLSR-ELKEPPQGAHFLSRSLDDALKL---TEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFP----------EIDLEKYKLLPEYPG--VLSDVQEEKGIKYKFEVYEKN-
General information:
TITO was launched using:
RESULT:
Template:
3GHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128010 for 1325 contacts (-96.6/contact) +
2D Compatibility (PS) -19804 + (NN) -8072 + (LL) 1832
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -173554.0 ( -130.98 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_3GHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHV-query.scw
PDB file :
Tito_Scwrl_3GHV.pdb
: