Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
4EHH Chain:A ((37-276))
-------------YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIET-----------------------HKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFY----
General information:
TITO was launched using:
RESULT:
Template:
4EHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158843 for 1865 contacts (-85.2/contact) +
2D Compatibility (PS) -24027 + (NN) -3900 + (LL) 2556
1D Compatibility (HY) -20000 + (ID) 5150
Total energy: -209364.0 ( -112.26 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_4EHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EHH-query.scw
PDB file :
Tito_Scwrl_4EHH.pdb
: