Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGN-GDPQNFKLSQDDIKGIQKLYGKRSNSRKK
2D1O Chain:A ((1-170))
FRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT-GTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDS---
General information:
TITO was launched using:
RESULT:
Template:
2D1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75137 for 1274 contacts (-59.0/contact) +
2D Compatibility (PS) -18818 + (NN) -16326 + (LL) 404
1D Compatibility (HY) -15200 + (ID) 4700
Total energy: -129777.0 ( -101.87 by residue)
QMean score : 0.856
(partial model without unconserved sides chains):
PDB file :
Tito_2D1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1O-query.scw
PDB file :
Tito_Scwrl_2D1O.pdb
: