Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
2ZVJ Chain:A ((5-216))
----------------------------------------------------DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQG-------
General information:
TITO was launched using:
RESULT:
Template:
2ZVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147454 for 1828 contacts (-80.7/contact) +
2D Compatibility (PS) -23185 + (NN) -9076 + (LL) 4584
1D Compatibility (HY) -30000 + (ID) 8600
Total energy: -213731.0 ( -116.92 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2ZVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZVJ-query.scw
PDB file :
Tito_Scwrl_2ZVJ.pdb
: