Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSILDGLADTTFRTITTDLLYVGSNDIQYEDIKGDMASKLGYFPQKFPLTSFRGSPFQEKMTAGDNPQLVPADQVNITEFYNKSLSSFKENEENIQCGENFMDIECFMVLNPSQQLAIAVLSLTLGTFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFIDFHVFHRKDSRNVFLFKLGGV--TASFTASVGSLFLTAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLL--GWNCEKLQSV-------CSDIFPH----IDETYLMFWIGVTSVLLLFIVYAYMYILWKAHSHAVRMIQRGTQKSIIIHTSEDGKVQVTRPDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFRSM--FPSCEGTAQPLDNSMGDSDCLHKHANNAASVHRAAESCIKSTVKIAKVTMSVSTDTSAEAL |
2YCY Chain:A ((10-299)) | ------------------------------------------------------------------------------------------------------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNL-FITSLACADLVVGLLVV-PFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIP-----LLIMIFVALRV-YREAKEQIR--DRASKRK---------RVMLMREHKA------LKTLGIIMGVFTLCWLPFFLVNIVNVFNR-DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -223961 for 1956 contacts (-114.5/contact) +
2D Compatibility (PS) -27651 + (NN) -8538 + (LL) 12344
1D Compatibility (HY) -32800 + (ID) 4150
Total energy: -284756.0 ( -145.58 by residue)
QMean score : 0.300
|
|
|