Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITLNNQDQPVPFNSSHPDEYKIAALVFYSCIFIIGLFVNITALWVFSCTTKKRTTVTIYMMNVALVDLIFIMTLPFRMFYYA-KDEWPFGEYFCQILGALTVFYPSIALWLLAFISADRYMAIVQPKYAKELKNTCKAVLACVGVWIMTLTTTTPLLLLYKDPDKDSTPATCLKISDIIYLKAVNVLNLTRLTFF-----FLIPLFIMIGCYLVIIHNLLHG----RTSKLKPKVKEKSIRIIITLLVQVLVCFMPFHICFAFLMLGTGENSYNP-WGAFTTFLMNLSTCLDVILYYIVSKQFQARVISVMLYRNYLRSMRRKSFRSGSLRSLSNINSEML |
| 3C9L Chain:A ((49-321)) | ---------------------------------MLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN-HAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPY-AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240540 for 2068 contacts (-116.3/contact) +
2D Compatibility (PS) -26728 + (NN) -4744 + (LL) 4104
1D Compatibility (HY) -27200 + (ID) 2800
Total energy: -297908.0 ( -144.06 by residue)
QMean score : 0.338
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