Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANSTGLNASEVAGSLGLILAAVVEVGALLGNGALLVVVLRTPGLRDALYLAHLCVVDLLAAASIMPLGLLAAPPPGLGRVRLGPAPCRAARFLSAALL---PACTLGVAALGLARYRLIVHPLR-----PGSRPPPVLVLTAVWAAAGLLGALSLLGTPPAPPPAPARCSVLAGGLG----------PFRPLWALLAFA---LPALLLLGAYGGIFVVARRAALR-PPRPARGSRLHSDSLDSRLSILPPLRPRLPGGKAALAPALAVGQFAACWLP-YGCACLAPAARAAEAEAAVTWVAYSAF-------AAHPFLYGLLQRPVRLALGRLSRRALPGPVRACTPQAWHPRALLQCLQRPPEGPAVGPSEAPEQTPELAGGRSPAYQGPPESSLS |
| 2YDV Chain:A ((6-304)) | -------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQN---VTNYFVVS--AAAADILVGVLAIPF-AIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC--WVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ--------S-----------TLQKEVHAAKSL---AIIVGLFALCWLPLHIINCF--TFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYFQ----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161703 for 1825 contacts (-88.6/contact) +
2D Compatibility (PS) -27303 + (NN) -15060 + (LL) 4304
1D Compatibility (HY) -22000 + (ID) 3700
Total energy: -225462.0 ( -123.54 by residue)
QMean score : 0.195
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