Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIMGQCYYNETIGFFYNNSGKELSSHWRPKDVVVVALGLTVSVLVLLTNLLVIAAIASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLS-LEGWFLRQGLLDTSLTASVATLLAIAVERHRSVMAVQLHSRLPRG-RVVMLIVGVWVAALGLGLLPAHSWHCLCALDRCSR---------------MAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHPRYRETTLSLV---KTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFL--LLAEANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL |
| 3VGA Chain:A ((8-308)) | ---------------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGV--LAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN-CGQ-----SQGCGEGQVACLFEDVVPMNYMVYFNFFA-CVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFF-CPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -222292 for 1997 contacts (-111.3/contact) +
2D Compatibility (PS) -28318 + (NN) -12758 + (LL) 3944
1D Compatibility (HY) -27600 + (ID) 4150
Total energy: -291174.0 ( -145.81 by residue)
QMean score : 0.274
|
|
|