Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDNASFSEPWPANASGPDPALSCSNASTLAPLPAPLAVAV----------PVVYAVICAVGLAGNSAVLYVLLRAPRMKTVTNLFILNLAIADELFTLVLPINIADFLLR-QWPFGELMCKLIVAIDQYNTFSSLYFLTVMSADRYLVVLATAESRRVAGR-TYSAARAVSLAVWGIVTLVVLPFAVFARLDDEQGRRQCVLVFPQPEAFWWRASRLYTL---VLGFAIPVSTICVLYTTL----------------------------------------LCRLHAMRLDSHAKALERAKKRVTFLVVAILAVCLLCWTPYHLSTVVALTTDLP-QTPLVIAI------SYFIT-SLSYANSCLNPFLYAFLDASFRRNLRQLITCRAAA |
| 4XNV Chain:A ((38-382)) | ----------------------------------SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KS---LGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVR--KNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214394 for 2008 contacts (-106.8/contact) +
2D Compatibility (PS) -27308 + (NN) -2894 + (LL) 2572
1D Compatibility (HY) -29600 + (ID) 4100
Total energy: -275724.0 ( -137.31 by residue)
QMean score : 0.166
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