Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQAAGHPEPLDSRGSFSLPTMGANVSQDNGTGHNATFSEPLPFLYVLLPAVYSGICAVGLTGNTAVILVILRAPKMKTVTNVFILNLAVADGLFTLVLPVNIAEHLLQY-WPFGELLCKLVLAVDHYNIFSSIYFLAVMSVDRYLVVLATVRSRHMPWRTYRGAKVASLCVWLGVTVLVLPFFSFAGVYSNELQVPSCGLSFPWPEQVWFKASRVYTL---VLGFVLPVCTICVLYTDLLRRL------------------------RAVRLRSGAK-----------ALGKAR---------RKVTVLVLVVLAVCLLCWTPFHLASVVALTTDLP-QTPLVISM------SYVIT-SLSYANSCLNPFLYAFLDDNFRKNFRSILRC |
4XNW Chain:A ((48-382)) | ------------------------------------------FQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPLKS--LGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITC---YDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238171 for 2034 contacts (-117.1/contact) +
2D Compatibility (PS) -27617 + (NN) -6761 + (LL) 1536
1D Compatibility (HY) -30400 + (ID) 4450
Total energy: -305863.0 ( -150.38 by residue)
QMean score : 0.217
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