Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METSSPRPPRPSSNPGLSLDARLGVDTRLWAKVLFTALYALIWALGAAGNALSAHVVLKARAGRAGRLRH----HVLSLALAGLLLLLVGVPVELYSFVWFHYPWVFGDLGCRGYYFVHELCAYATVLSVAGLSAERCLAVCQPLRARSLLTPRRTRWLVALSWAASLGLA-LPMAVIMGQKHELETADGEPEPASRVCTVLVSRTALQVFIQVNVLVSFVLPLALTAFLNGVTVSHLLALCSQVPSTSTPGSSTPSRLELLSEEGLLSFIVWKKTFIQGGQVSLVRHKDVRRIRSLQRSVQVLRAIVVMYVICWLPYHARRLMYCY----VPDDAWTDPLYNFYHYFYMVTNTLFYVSSAVTPLLYNAVSSSFRKLFLEAVSSLCGEHHPMKRLPPKPQSPTLMDTASGFGDPPETRT |
| 3ZPR Chain:A ((17-295)) | -------------------------------------LMALVVLLIVAGN-----VLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV--RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPG---CCDFVTNRAYAI---ASSIISFYIPLLIMIF---VALRVYREAKEQ---------------MLMRE-----------------------HK----------ALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD------------WLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLL------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZPR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -191509 for 1910 contacts (-100.3/contact) +
2D Compatibility (PS) -26374 + (NN) -9235 + (LL) 6988
1D Compatibility (HY) -26400 + (ID) 3850
Total energy: -250380.0 ( -131.09 by residue)
QMean score : 0.292
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