Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKINQTFVREFILLGLSGYPKLEIIFFALILVMYVVILIG---NGVLIIASILDSRLHMPMYFFLGNLSFLDICYTTSSIPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECFLLGMMAFDRYVAICNPL-RYPIIMNKVVYVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCEILAVLKLACSDISVNIVTLAVSNIAFL--------VLPLLVIFFSYMFILYTILRTNSATGRHKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDLLGKDNLQATE-GLVSM----FYGVVTPMLNPIIYSLRNKDVKAAIKYLLSRKAINQ |
1LN6 Chain:A ((40-312)) | -----------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM-----------GVAFTWVMALA-----CAAPPLVGWSRYIPEGMQCSCG-IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVVATTLCCGKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199463 for 1997 contacts (-99.9/contact) +
2D Compatibility (PS) -24354 + (NN) 19128 + (LL) 3868
1D Compatibility (HY) -22800 + (ID) 2900
Total energy: -226521.0 ( -113.43 by residue)
QMean score : 0.199
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