Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNIFIVFSVTTDPHLHSPMYFLLASLSFIDL----GACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAFDRYVALCKPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAF-CGPNVLDSFYCDLPRLLRLACTDTYRLQFMVTVNSGFIC---VGTFFILLI----SYVFILFTVWKHSSGGSSKALSTLSAHSTVV--------------LLFFGPPMFVYTRPHPNSQMDK-FLAI--FDAVLTPFLNPVVYTFRNKEMKAAIKRVCKQLVIYKKIS |
| 2PED Chain:A ((34-315)) | ----------------LAEPWQFSMLA-AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT----LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV-KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT--HQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PED.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222601 for 1869 contacts (-119.1/contact) +
2D Compatibility (PS) -25122 + (NN) -1573 + (LL) 3020
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -248276.0 ( -132.84 by residue)
QMean score : 0.174
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