Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSHTNVTIFHPAVFVLPGIPGLEAYHIWLSIPLCLIYITAVLGNSILIVVIVMERNLHVPMYFFLSMLAVMDILLSTTTVPKALAIF----WLQAHNIAFDACVTQGFFVHMMFVGESAILLAMAFDRFVAICAPLRYTTVLTWPVVGRIALAVITRSFCIIFPVIFLLKRLPFCLTNIVPHSYCEHIGVARL-----ACADITVNIWYG-------FSVPIVMVILDVILIAVSYSLILRAVFRLPSQD-----ARHKALSTCGSHLCVILMFYVPSFFTLLTHHFGRN-IPQHVHILLANLYVAVPPMLNPIVYGVKTKQIREGVAHRFFDIKTWCCTSPLGS |
| 2YCX Chain:A ((9-283)) | -----------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL----CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMT-----RARAKVI---ICTVWAISALVSFLP-----IMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAM-NPIIYCRSPDFRKAFK------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -276320 for 1796 contacts (-153.9/contact) +
2D Compatibility (PS) -25206 + (NN) -3376 + (LL) 4012
1D Compatibility (HY) -19600 + (ID) 3250
Total energy: -323740.0 ( -180.26 by residue)
QMean score : 0.196
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