Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGPRNQTAVSEFLLMKVTEDPELKLIPFSLFLSMYLVTILGNLLILLAVISDSHLHTPMYFLLFNLSFTDICLTTTTVPKILVNIQAQNQSITYTGCLTQICLVLVFAGLESCFLAVMAYDRYVAICHPLRYTVLMNVHFWGLLILLSMFMSTMDALVQSLMVLQLSFCKNVEIPLFFCEVVQVIKLAC--SDTLINNILIYFASSVFGAIPLSGIIFSYSQIVTSVLR--MPSARGK----------------YKAFSTCGCHLSVFSLFYGTAFGVYISSAVAESSRITAVASVMYTVVPQMMNPFIYSLRNKEMKKALRKLIGRLFPF |
| 4UG2 Chain:A ((14-303)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP-FAIAISTGFCAACH-GCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQV---ACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQL-----ARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCF--TFFCPDCSHAPLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHVLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248461 for 1998 contacts (-124.4/contact) +
2D Compatibility (PS) -25825 + (NN) 2688 + (LL) 3544
1D Compatibility (HY) -20400 + (ID) 3700
Total energy: -292154.0 ( -146.22 by residue)
QMean score : 0.207
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