Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLG---IVGNIMVVLVVMRTKHMRTPTNCYLVSLAVADLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCMLW-----FFLLDLNISTYKDAIVISCGYKISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENWFLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSVALNYSVIKESDHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS |
4MQS Chain:A ((36-333)) | -----------------------KTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFI---LWAPAILFWQFIVGVRTVEDG---ECYIQFFSN-AAVTFGTAIAAFY-LPVIIMTVLYWHISRAS-KS----------------------------------PPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLC-YINSTINPACYALCNATFKKTFKHLLM-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MQS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254628 for 1975 contacts (-128.9/contact) +
2D Compatibility (PS) -27031 + (NN) -2044 + (LL) 7828
1D Compatibility (HY) -27200 + (ID) 3800
Total energy: -306875.0 ( -155.38 by residue)
QMean score : 0.342
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