Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GVVGVAGAGCNAGQLTVCTGAI--AGGARPTAACCSSLRAQ-----QGCFCQFAKDPRYGRYVNSPNA-RKAVSSCGIALPTCH
1HYP Chain:A ((6-73))
-------PSCP--DLSICLNILGGSLGT--VDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPS--
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29829 for 365 contacts (-81.7/contact) +
2D Compatibility (PS) -6094 + (NN) 315 + (LL) 288
1D Compatibility (HY) -5600 + (ID) 700
Total energy: -41620.0 ( -114.03 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: