Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPGGCVPQL---NRLLACRAYLV----PGA-AD--------PSADCCSALSSISRDCACSTMG-----------------------IINSIPSRCNIGRVNCSA
2LVF Chain:A ((5-106))
--QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCP-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31440 for 362 contacts (-86.9/contact) +
2D Compatibility (PS) -6369 + (NN) 113 + (LL) 124
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -44472.0 ( -122.85 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: