Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSICDMDINDMQKCRPAITGN----NPP-------PPVNDCCVVVRKANFECLCRFK-FYLPI-L-R----IDPSKVVALVAKCGVTTVPRSCQV
1S6D Chain:A ((19-102))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--SQPCQ-
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36163 for 428 contacts (-84.5/contact) +
2D Compatibility (PS) -6802 + (NN) -1158 + (LL) 1136
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -47187.0 ( -110.25 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: