Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IPVCNIDTNDLAKCRPAVTGN----NPP-------PPGPDCCAVARVANLQCLCPYKP-YLPT-V-G----IDPSRVRPLLANCGVNSPSCF
1S6D Chain:A ((20-101))
---------MLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPC-
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26332 for 414 contacts (-63.6/contact) +
2D Compatibility (PS) -6468 + (NN) 1759 + (LL) 464
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -34477.0 ( -83.28 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: