Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMA--LKLAPCASAGQDPKSA-----------------PSSGCCAAVHTIGKQSPKCLCAVMLSDTA------KSAGI---KPEAAMSIPKRCNLVDRPVGYKCGAYTLP
1W2Q Chain:A ((4-112))
---RRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24384 for 478 contacts (-51.0/contact) +
2D Compatibility (PS) -8420 + (NN) -2973 + (LL) 436
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -40341.0 ( -84.40 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: