Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMA--LKLAPCASAGQDPKSA-----------------PSSGCCTAVHTIGKQSPKCLCAVMLSDTA------KSAGI---KPEVAMSIPKRCNLVDRPVGYKCGAYTLP
1W2Q Chain:A ((5-112))
----RERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25100 for 476 contacts (-52.7/contact) +
2D Compatibility (PS) -8131 + (NN) -1852 + (LL) 264
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -39419.0 ( -82.81 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: