Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAGTECQNDVEVLKTTCYKFVEKD----GPKL------QPSPDCCTSMKGVNVPCVCTYLGSPGVRDNI-------NMDKVFYVTKQCGIAIPGNCGGSKV
1S6D Chain:A ((22-101))
--------------NHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAI-MMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPC-----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30956 for 374 contacts (-82.8/contact) +
2D Compatibility (PS) -6256 + (NN) -656 + (LL) 936
1D Compatibility (HY) -4400 + (ID) 500
Total energy: -41832.0 ( -111.85 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: