Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAPSSAQGTTTPADASGAVPSCASKLVTCAGYLNT----T---DTP-----------PESCCDPLKEAATTQAACMCAILMNKA--A---LQAFGV--AP-EQGVLLAKRCGVTNDASTCAK
1W2Q Chain:A ((23-112))
-----------------------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33980 for 378 contacts (-89.9/contact) +
2D Compatibility (PS) -6424 + (NN) -741 + (LL) 908
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -44987.0 ( -119.01 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: