Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDTGAAAGVPSCASKLVPCGGYLNATAAPPPASCCGPLREAAANE-TACLCAILTNKAALQAFGVAPEQGLLL-AKRCGVTTDA-SACAKSASSSATAAAAAAV
1HYP Chain:A ((10-78))
---------------DLSICLNILGGSLGT-VDDCCALIGGLGDIEAIVCLCIQLRA----LGI-LNLNRNLQLILNSCGRSYPSNATCP---------------
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33924 for 399 contacts (-85.0/contact) +
2D Compatibility (PS) -6653 + (NN) -2061 + (LL) 2160
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -46428.0 ( -116.36 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: