Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGQVTSGLAPCLPYLQGSGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIK------G----IDTGKAAGLPGVCGVNIPYKISPSTDCSKVQ
1PNB Chain:B ((13-67))
------------------------QCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9902 for 236 contacts (-42.0/contact) +
2D Compatibility (PS) -4552 + (NN) -811 + (LL) 1264
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -17101.0 ( -72.46 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: