Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----VTCSPVQLSPCLGPINSGAP-----SPTTCCQKLREQRP-----CLCGYLKNPSLRQYVNSPN---------ARKLASNCGVPVPQC----------
2LSE Chain:A ((1-101))
MQEERKKLLEKLEKILDEVTDGAPDEARERIEKLAKDVKDELEEGDAKNMIEKFRDEMEQMYKDAPNAVMEQLLEEIEKLLKKAGSLVPRGSYLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2LSE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17606 for 408 contacts (-43.2/contact) +
2D Compatibility (PS) -6797 + (NN) -2277 + (LL) 0
1D Compatibility (HY) -400 + (ID) 650
Total energy: -27730.0 ( -67.97 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_2LSE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LSE-query.scw
PDB file :
Tito_Scwrl_2LSE.pdb
: