Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCNTDLTDLVSKCQRFVIKTGPKFSPSPSCCAVVKNV-D---VACVCDLITKEIEDMIDMDKM-VYVARSCGKKISAGTKCGNTQANAGGIVSGYIVPTA
1HYP Chain:A ((25-79))
---------------------------VDDCCALIGGLGDIEAIVCLCIQLRA--LGILNLNRNLQLILNSCGRSYPSNATCPR-----------------
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24526 for 258 contacts (-95.1/contact) +
2D Compatibility (PS) -5151 + (NN) -2734 + (LL) 2320
1D Compatibility (HY) -6000 + (ID) 500
Total energy: -36591.0 ( -141.83 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: