Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAQCKEERR--LGLNACKPVVY-----GRPP----------SPQCCQRIRVTHIECVCPVVTPKLAALI-------------DVNRAIRVIEGCGRRVPRHFKCGSKLSPPPIHMRFLQADL
2LVF Chain:A ((4-106))
--AQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCP-----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26412 for 441 contacts (-59.9/contact) +
2D Compatibility (PS) -7831 + (NN) -2879 + (LL) 1332
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -39990.0 ( -90.68 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: