Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQQVSACQNDID--ALWRSCKQFVQK-----EGPKMP------PSEDCCKTIKALDAHASCICDYVGSPDARNKL-------------DLDKVFFVTKQCGVTVPKGCGSKQD
2LVF Chain:A ((6-106))
----EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDE--SCRCEGL-RMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRCP----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22463 for 458 contacts (-49.0/contact) +
2D Compatibility (PS) -7745 + (NN) -1703 + (LL) 644
1D Compatibility (HY) -5600 + (ID) 700
Total energy: -37567.0 ( -82.02 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: