Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNL--SNMQVCAPLVL----PG----AVNPAPN-------SNCCIALQAT--NKDCICNALR---------------------AATTFTTSCNLPSLD-C
1W2Q Chain:A ((14-117))
SSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRC
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36626 for 328 contacts (-111.7/contact) +
2D Compatibility (PS) -6733 + (NN) -5985 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -54394.0 ( -165.84 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: