Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDPITPGPTIADCSPRL---VALMPCAPFVQGTAQ-------M-----PAQSCCDNLNQLYTLQPGCLCLLLNDTTLS---DF--PINRTRALQLPVLCKLQANASACSEID
1S6D Chain:A ((9-102))
----------SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMS--QPCQ---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52391 for 512 contacts (-102.3/contact) +
2D Compatibility (PS) -7310 + (NN) 202 + (LL) 580
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -63319.0 ( -123.67 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: