Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCPNELNRLNVCAPFVVPGV-----PEAT-----PSSDCCAALQSVQHDCLCNTLR-----------------IASRLPSRCNIPALSCGVQINA
1S6D Chain:A ((19-102))
-------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQ-----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45077 for 345 contacts (-130.7/contact) +
2D Compatibility (PS) -5566 + (NN) -42 + (LL) 788
1D Compatibility (HY) -6800 + (ID) 700
Total energy: -57397.0 ( -166.37 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: