Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKEERK--VAGNACRPVLYW-----RSP----------SADCCQRVRVSHVECVCPYVSTKTAAIIG----------GLGVPYVVKKIEGCGRTVPRKFKCGSITTP
2LVF Chain:A ((5-101))
---QEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18390 for 415 contacts (-44.3/contact) +
2D Compatibility (PS) -6975 + (NN) 756 + (LL) 540
1D Compatibility (HY) -800 + (ID) 500
Total energy: -25369.0 ( -61.13 by residue)
QMean score : 0.009
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: