Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSCGDVAT--QLAPCINYLRSAGPLPP---ACCNGVKNLKNSAA-----------TTQDRRTACKCLINASKSI-----SGVNFGLAAGLPGKCGVNIPYKISPSTNCDQVN-------- |
1QPO Chain:A ((1-284)) | GLSDWELAAARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QPO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25684 for 459 contacts (-56.0/contact) +
2D Compatibility (PS) -9059 + (NN) -3234 + (LL) -296
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -41423.0 ( -90.25 by residue)
QMean score : 0.397
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