Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------------------------MFPKKVLGEEWEEGRKFNKLYQKDKQRKLIKRQGILRESQNGIQVYKEDPEIVEIAKPIGKWTQMVMQDGGLMQRLAQLMK-RESGRKGF-----WELFVEAQAS----THGKHKGKGR |
2VTY Chain:A ((34-186)) | VYPLPENMVYRFDKSTNILDYLSTERDHVMMAVRYYMSKQRLDDLYRQLPTKTRSYIDIINIYCDKVSNDYMASTKSFTVYDINNEVNTIMLDNKGLGVRLATISFITELGRRCMNPVKTIKMFTLLSHTICDDCFVDYITDIS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VTY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 34127 for 578 contacts (59.0/contact) +
2D Compatibility (PS) -11992 + (NN) -8958 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 650
Total energy: 9727.0 ( 16.83 by residue)
QMean score : 0.213
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