Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAACRGYCRKIY-LAIDNVLYAI--NETMVMWKKELKSLVKGNPTIF--NDKLAISTLDDCLYMLDMRMIVQSGPIISPVIMIVTK
2AD6 Chain:A ((472-529))
-----YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAF
General information:
TITO was launched using:
RESULT:
Template:
2AD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28696 for 281 contacts (-102.1/contact) +
2D Compatibility (PS) -5388 + (NN) 4807 + (LL) 380
1D Compatibility (HY) -800 + (ID) 450
Total energy: -30147.0 ( -107.28 by residue)
QMean score : -0.061
(partial model without unconserved sides chains):
PDB file :
Tito_2AD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AD6-query.scw
PDB file :
Tito_Scwrl_2AD6.pdb
: