Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISGSKNYDIDSVSVIGENLVIATINGVNSRNEAEFLRNKKLYVERNKLLKLNDENEFYQSDLVNMEIRLENDELYGYIKSIYNFGSGDILEISVISTKKNIMLPFTKEIFPYVNIKERYITLNMPEFIG
2EY4 Chain:C ((33-65))
-----------------------------------------------------------------------------------------------------LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGEVLYVD-------------------
General information:
TITO was launched using:
RESULT:
Template:
2EY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15716 for 147 contacts (-106.9/contact) +
2D Compatibility (PS) -3331 + (NN) 536 + (LL) 7464
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -13647.0 ( -92.84 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_2EY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EY4-query.scw
PDB file :
Tito_Scwrl_2EY4.pdb
: