Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------MSKDTVITEEIIEHAKYYVKHKSHISEYPGGLE--SEKQVLTKILGFLEGKFNNMQLDSDLVDKPATLNQAVDEADDEQLQSPEPKSADGC
2CQ8 Chain:A ((1-110))
GSSGSSGFFKGAASSVLELTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLRGDDEESGPSSG
General information:
TITO was launched using:
RESULT:
Template:
2CQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4977 for 579 contacts (-8.6/contact) +
2D Compatibility (PS) -9364 + (NN) -3430 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -20471.0 ( -35.36 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_2CQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CQ8-query.scw
PDB file :
Tito_Scwrl_2CQ8.pdb
: