Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSVIEITSIKRRFCAYLIDMAVLLIPNLLIIILLKNFPLILDLLYMCVNCSYFTYFISSAAQATPGQQLMNIHTISLDGSKINLSLAFDR-SISQFFLHLLNNVIAILIELFQEQNELVSALIILGVIMLLLTICWYLVACFSQEKQTYHDMLFDTIVVKGAIK--
1ROC Chain:A ((1-155))
GASIVSLLGIKV------LNNPAKFTDPYEFEITFECLESLKH------DLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDHIVRNILAEKPRVTRFNIVWD
General information:
TITO was launched using:
RESULT:
Template:
1ROC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144981 for 1080 contacts (-134.2/contact) +
2D Compatibility (PS) -15405 + (NN) 5961 + (LL) 1600
1D Compatibility (HY) 0 + (ID) 950
Total energy: -153775.0 ( -142.38 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_1ROC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ROC-query.scw
PDB file :
Tito_Scwrl_1ROC.pdb
: