Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVSSDTELIKSTIMSIID-QNKGRDIVTFDVQNKTIIA--KYMIIASGDSSRHVKALAEHVMKSLKQYYKMDVEGMDEGNWVILNFQGIMVHIFRPEVREYYKIEELWN
2OMD Chain:A ((64-125))
--------IKEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17539 for 351 contacts (-50.0/contact) +
2D Compatibility (PS) -6429 + (NN) -4676 + (LL) 2848
1D Compatibility (HY) 1600 + (ID) 250
Total energy: -24446.0 ( -69.65 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OMD-query.scw
PDB file :
Tito_Scwrl_2OMD.pdb
: