Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEAYMLASNSTETILVADQNIYNSSASNNPALNTQDLSGSTPDKDKYVTLNSKEEWDKFFKLQNNPSTNITNKV---RTKPHVRKNSNGMYRYTAEENKYNGKEIIGKVAEQIKEEISQKIKSDTMKLVKLKESKNEDNSVKPAIRIVLNDNVKEINMADLLSGSVCKEYNVKAITFCFPDKSNTRGIRCRIDEHGTRIYEVANGSYEMDLRWYCEGKECKIKILMKDDGSIRLIEDNGITEEQLKAHKEIRVGRQYEAKSLHEALALQLPQLQQKCSETTEILSRLADVSTSQAQQVLSAQVSK |
3AKF Chain:A ((10-42)) | --------------------------------------------------------------------TFTNPLAEKRADPHIFKHTDGYYYFTATVPEYDRIVLRRATTLQGLATAPETTIWTKHASGVMGAHIWAPEIHFIDGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLDATTFVVNGVRHLAWAQRNPAEDNNTSLFIAKMANPWTISGTPTEISQPTLSWETVGYKVNEGPAVIQHGGKVFLTYSASATDANYCLGMLSASASADLLNAASWTKSSQP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2727 for 108 contacts (25.2/contact) +
2D Compatibility (PS) -3172 + (NN) -601 + (LL) 3144
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -1252.0 ( -11.59 by residue)
QMean score : 0.524
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