Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLP----NESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQ-INFYSMYNDK-FRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENLDAIIESTRKWINNESVSIRQISVRVKYEMTKVRDEFFKFTR
4DCS Chain:A ((180-327))
--------------AEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSN------DAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV--VAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKD------ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL
General information:
TITO was launched using:
RESULT:
Template:
4DCS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64706 for 864 contacts (-74.9/contact) +
2D Compatibility (PS) -14585 + (NN) -4656 + (LL) 1976
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -90121.0 ( -104.31 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_4DCS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DCS-query.scw
PDB file :
Tito_Scwrl_4DCS.pdb
: