Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNLQSIIKELQDFWIGEGCTILHPYTSE---------VGAGTLHPATIMSAIDVKPT-KIAYLQPVVRP----AD----GRYGDNPNRLYQHHQYQVIIKPSGN-----NLQDVYLSSLRA-LGISTEK------------------------YDIKF---IEDDWENPSVGASGLGWEVTC----------NGMEVTQLTYIQ--QI--GS-INCRIIPGEVAYGLERLAMCIQGVNNVYDI-IWNDNGITYGDIFKQREYELSYLALDYYNTEVVQQQFEDTEKLCKFLIEKELPVAAYDQCVKTSHLLNLLDARGILGVNERTAYIGRVRELTKKCCELYMSK |
1YFS Chain:A ((3-244)) | LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTS------RHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YFS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -88815 for 1251 contacts (-71.0/contact) +
2D Compatibility (PS) -18855 + (NN) -4007 + (LL) -100
1D Compatibility (HY) -6000 + (ID) 1850
Total energy: -119627.0 ( -95.63 by residue)
QMean score : 0.355
|
|
|