Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKDEWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
1PP9 Chain:E ((38-196))
-----------------------------------LVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVK--KPEWVILIGVCTHLGCVPIANA-GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG---
General information:
TITO was launched using:
RESULT:
Template:
1PP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43436 for 1103 contacts (-39.4/contact) +
2D Compatibility (PS) -16910 + (NN) -3317 + (LL) 1472
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -82141.0 ( -74.47 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1PP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PP9-query.scw
PDB file :
Tito_Scwrl_1PP9.pdb
: