Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLP-GNIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCK---SRLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSY---------TSKKHVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
2VOM Chain:A ((6-236))
--FFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ----
General information:
TITO was launched using:
RESULT:
Template:
2VOM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130533 for 1742 contacts (-74.9/contact) +
2D Compatibility (PS) -23506 + (NN) -9616 + (LL) 260
1D Compatibility (HY) -14000 + (ID) 4050
Total energy: -181445.0 ( -104.16 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_2VOM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VOM-query.scw
PDB file :
Tito_Scwrl_2VOM.pdb
: