Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------MEKYIVFVLSYILGSIPFSL------------VITKIKGINL----------REVGSGNIGATNVARTGSKCIAALALLL--DSLKGFIAVYIAK-------QFFDDGSFHMYASAILV------VLGHMFPVWLKFSGGKGVATTLGILIA---------LNISLVLAFVFV---WLAVFFAFRYSSLASLTSTIAAVLSSFFFQR-DLFFTLLT---------------------------VAILIFFKHYRNIVNLLQGRERKFS |
| 4UX8 Chain:C ((25-343)) | DRLDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNFSLTSGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSKGNNCLDAAKACNLDDTCKKYRSAYITPCTTSMSNEVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCSYEERERPNCLSLQDSCKTNYICRSRLADFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVMTPNYVDSSSLSVAPWCDCSNSGNDLEDCLKFLNFFKDNTCLKNAIQAFGNG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UX8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134276 for 1207 contacts (-111.2/contact) +
2D Compatibility (PS) -18936 + (NN) -7048 + (LL) 104
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -168306.0 ( -139.44 by residue)
QMean score : 0.222
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