Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSGINNFMNEVLFFKIFYVPFIILLVAFGYIFLTLRFKFLNIRMFKHAFTILCGKYDTDHHDGHITHFQAFVIALSSTVGLGTVAGVAIAVSMGGPGAIPWMMITGFFGMSAKFAEVTLAFRHRTEGQEQLFSGPFQYIR--NGLEEFGFKKLGIILAAVYA--VFFVLSGLGGSVAFQ-TNQ-MVSILSGYSNWVDSHPWFLSSIISALLALVIIGGIRRIARVSSALVPVMSLIYIFSCITIITFNIHNFSNVFKILFSNMIDFNA-VGGG-VVGAFVAGIQR-AIFASEAGVGSASITHAVAKDEEPVRTGLVAMIEPCFDTMLICCLTGITIVITGAYQTGIGEGILVTQKAFETVSSWFPIFLIIAAPLFAFSSVISFVYCCEMGWLYLFGAKSIVIYRIAVVVVAFFSGLSKDIMAIANIGGTLFSCLALINMTALILFSSQINDEVQCYSKRLRNNKIN |
| 3NKU Chain:A ((12-205)) | ---------------------------------------------------------------------------------------------------------GSLYSDERDKPLLSPTAQKKFEEYQNKLANLSKIIRENEGNEVSPWQEWENGLRQIYKEMIYDAFDALGV----EMPKDMEVHFAGS----------------SDLDAFVIVKNDEDIKKVKPVFDALNNLCQRIFTASINP----------SRLIGTPDDLFGMLKDGMVADVEATA---MSILTSKPVLPRYELGEELRDKIKQEPS--------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -122753 for 1147 contacts (-107.0/contact) +
2D Compatibility (PS) -17662 + (NN) -1895 + (LL) 24760
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -122800.0 ( -107.06 by residue)
QMean score : 0.083
|
|
|