Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSFFVFLIFFSVSALASVSDVQLKEKYRDWLVYTALEDGEKVCYIVSYPKKKSEHYTTNRKPYVMVSYVDKKADEVSVTSGFQYDKEPIVLNIDKKIKYALYIIQGDLAWTEHTKTDRDLILKMKQGLSMVVS--GRIKATTIDDTYSLLGFQKAYQKMHDLCYVK-
1JJ2 Chain:J ((1-132))
---------------MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSG---TKNRHPKAGL------GDKITVSVTKGTPE------MRRQVLEAVVVRQ-----RKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-FGSVASAATMIV
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27807 for 1016 contacts (-27.4/contact) +
2D Compatibility (PS) -13715 + (NN) -1115 + (LL) 3168
1D Compatibility (HY) -400 + (ID) 800
Total energy: -40669.0 ( -40.03 by residue)
QMean score : 0.232
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: